Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs13004867 chr2:86982504 C/G 2.85E-9 502 32.43 27.77 14.73 KM Plot
THCA rs13019439 chr2:87026150 T/C 6.09E-8 503 32.82 28.12 32.1 KM Plot
THCA rs13023213 chr2:87021943 A/G 6.02E-8 503 32.43 28.63 32.1 KM Plot
THCA rs13029597 chr2:86994281 G/A 4.89E-9 500 32.35 28 14.73 KM Plot
THCA rs13032379 chr2:87040823 T/A 7.86E-8 496 32.6 28.63 32.1 KM Plot
THCA rs13088323 chr3:14614114 G/A 0.000112 495 31.83 29.9 27.8 KM Plot
THCA rs13090178 chr3:14609299 C/T 4.82E-5 503 32.27 27.27 23.5 KM Plot
THCA rs13090879 chr3:14609519 G/A 4.78E-5 500 32.27 27.18 23.5 KM Plot
THCA rs13104157 chr4:3366950 T/C 0.000117 494 27.1 31.83 32.58 KM Plot
THCA rs13150241 chr4:3367281 A/G 5.36E-5 494 26.45 31.62 33.08 KM Plot
THCA rs13204752 chr6:130376221 G/T 2.98E-7 497 31.28 33.53 32.5 KM Plot
THCA rs13208758 chr6:130354071 G/A 8.1E-5 490 31.3 32.13 32.9 KM Plot
THCA rs13221082 chr7:32799538 G/T 9.88E-5 500 31.47 31.57 32.1 KM Plot
THCA rs13222235 chr7:64299586 G/T 3.38E-10 503 31.5 32.43 30.38 KM Plot
THCA rs13228599 chr7:32801638 C/A 9.96E-5 500 31.43 31.57 32.1 KM Plot